Download MendeleyStructure of the Vo sector of V-ATPase in the adult cortex and hippocampus
Zhang, M., Feng, J.To be published.
8XLI | pdb_00008xli
Structure of the Vo sector of V-ATPase in the adult cortex and hippocampus
- PDB DOI: https://doi.org/10.2210/pdb8XLI/pdb
- EM Map EMD-38449: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Rattus norvegicus
- Mutation(s): No
- Deposited: 2023-12-26 Released: 2025-07-02
- Funding Organization(s): Chinese Academy of Sciences
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.90 Å
- Aggregation State: TISSUE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase 116 kDa subunit a 1 | A [auth a] | 828 | Rattus norvegicus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P25286 (Rattus norvegicus) Explore P25286 Go to UniProtKB: P25286 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P25286 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a | B [auth b] | 203 | Rattus norvegicus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for B0K022 (Rattus norvegicus) Explore B0K022 Go to UniProtKB: B0K022 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B0K022 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase subunit S1 | C [auth c] | 204 | Rattus norvegicus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for O54715 (Rattus norvegicus) Explore O54715 Go to UniProtKB: O54715 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O54715 | ||||
Glycosylation | |||||
| Glycosylation Sites: 4 | Go to GlyGen: O54715-1 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase subunit | D [auth d] | 342 | Rattus norvegicus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase subunit e 2 | E [auth e] | 77 | Rattus norvegicus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5EB76 (Rattus norvegicus) Explore Q5EB76 Go to UniProtKB: Q5EB76 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5EB76 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribonuclease K | F [auth f] | 89 | Rattus norvegicus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| V-type proton ATPase 16 kDa proteolipid subunit c | 150 | Rattus norvegicus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P63081 (Rattus norvegicus) Explore P63081 Go to UniProtKB: P63081 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P63081 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Renin receptor cytoplasmic fragment | P [auth p] | 49 | Rattus norvegicus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q6AXS4 (Rattus norvegicus) Explore Q6AXS4 Go to UniProtKB: Q6AXS4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6AXS4 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Q [auth A], R [auth B], S [auth C], T [auth D] | 2 |  | N-Glycosylation | |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.90 Å
- Aggregation State: TISSUE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| Chinese Academy of Sciences | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-07-02
Type: Initial release
