9CHN | pdb_00009chn

P. vulgaris trimeric HigBA- operator 2 DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 
    0.218 (Depositor), 0.219 (DCC) 
  • R-Value Work: 
    0.174 (Depositor), 0.177 (DCC) 
  • R-Value Observed: 
    0.178 (Depositor) 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

P. vulgaris trimeric HigBA- operator 2 DNA

Pavelich, I.J.Schureck, M.A.Hoffer, E.D.Dunham, C.M.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antitoxin HigA
A, C
104Proteus vulgarisMutation(s): 0 
Gene Names: higA
UniProt
Find proteins for Q7A224 (Proteus vulgaris)
Explore Q7A224 
Go to UniProtKB:  Q7A224
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7A224
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Endoribonuclease HigB93Proteus vulgarisMutation(s): 0 
Gene Names: higB
EC: 3.1
UniProt
Find proteins for Q7A225 (Proteus vulgaris)
Explore Q7A225 
Go to UniProtKB:  Q7A225
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7A225
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains LengthOrganismImage
DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*CP*AP*CP*CP*AP*TP*GP*TP*AP*AP*TP*AP*C)-3')21Proteus vulgaris
Sequence Annotations
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  • Reference Sequence

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Entity ID: 4
MoleculeChains LengthOrganismImage
DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*TP*GP*GP*TP*GP*TP*GP*TP*AP*AP*TP*AP*C)-3')21Proteus vulgaris
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download Ideal Coordinates CCD File 
F [auth A]
G [auth A]
H [auth B]
I [auth D]
J [auth D]
F [auth A],
G [auth A],
H [auth B],
I [auth D],
J [auth D],
K [auth E],
L [auth E],
M [auth E],
N [auth E],
O [auth E],
P [auth E],
Q [auth E]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free:  0.218 (Depositor), 0.219 (DCC) 
  • R-Value Work:  0.174 (Depositor), 0.177 (DCC) 
  • R-Value Observed: 0.178 (Depositor) 
Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 139.82α = 90
b = 139.82β = 90
c = 80.8γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
Cootmodel building

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--
Other governmentUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-02
    Type: Initial release