Download MendeleyP. vulgaris trimeric HigBA- operator 2 DNA
Pavelich, I.J., Schureck, M.A., Hoffer, E.D., Dunham, C.M.To be published.
9CHN | pdb_00009chn
P. vulgaris trimeric HigBA- operator 2 DNA
- PDB DOI: https://doi.org/10.2210/pdb9CHN/pdb
- Classification: ANTITOXIN/DNA BINDING PROTEIN/DNA
- Organism(s): Proteus vulgaris
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-07-01 Released: 2025-07-02
- Funding Organization(s): Other private, Other government
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.218 (Depositor), 0.219 (DCC)
- R-Value Work: 0.174 (Depositor), 0.177 (DCC)
- R-Value Observed: 0.178 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Antitoxin HigA | 104 | Proteus vulgaris | Mutation(s): 0 Gene Names: higA |  | |
UniProt | |||||
Find proteins for Q7A224 (Proteus vulgaris) Explore Q7A224 Go to UniProtKB: Q7A224 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7A224 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endoribonuclease HigB | 93 | Proteus vulgaris | Mutation(s): 0 Gene Names: higB EC: 3.1 |  | |
UniProt | |||||
Find proteins for Q7A225 (Proteus vulgaris) Explore Q7A225 Go to UniProtKB: Q7A225 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7A225 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*CP*AP*CP*CP*AP*TP*GP*TP*AP*AP*TP*AP*C)-3') | 21 | Proteus vulgaris |  | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*GP*TP*AP*TP*TP*AP*CP*AP*TP*GP*GP*TP*GP*TP*GP*TP*AP*AP*TP*AP*C)-3') | 21 | Proteus vulgaris |  | ||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | F [auth A] G [auth A] H [auth B] I [auth D] J [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.218 (Depositor), 0.219 (DCC)
- R-Value Work: 0.174 (Depositor), 0.177 (DCC)
- R-Value Observed: 0.178 (Depositor)
Space Group: I 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 139.82 | α = 90 |
| b = 139.82 | β = 90 |
| c = 80.8 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-07-02 Deposition Author(s): Pavelich, I.J., Schureck, M.A., Hoffer, E.D., Dunham, C.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other private | United States | -- |
| Other government | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-07-02
Type: Initial release
